J3_5CZP_034

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5CZP_034 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.063

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5CZP|1|XA|C|936
5CZP|1|XA|A|937
5CZP|1|XA|A|938
5CZP|1|XA|G|939
*
5CZP|1|XA|C|1344
5CZP|1|XA|U|1345
5CZP|1|XA|A|1346
5CZP|1|XA|G|1347
5CZP|1|XA|U|1348
5CZP|1|XA|A|1349
5CZP|1|XA|A|1350
*
5CZP|1|XA|U|1372
5CZP|1|XA|G|1373
5CZP|1|XA|A|1374
5CZP|1|XA|A|1375
5CZP|1|XA|U|1376
5CZP|1|XA|A|1377
5CZP|1|XA|C|1378
5CZP|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9