J3_5DAT_070

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5DAT|1|2|A|217, 5DAT|1|2|U|238, 5DAT|1|2|C|239, 5DAT|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|A|213
5DAT|1|2|G|214
5DAT|1|2|A|215
5DAT|1|2|U|216
5DAT|1|2|A|217
5DAT|1|2|A|218
5DAT|1|2|A|219
5DAT|1|2|A|220
5DAT|1|2|A|221
5DAT|1|2|A|222
5DAT|1|2|U|223
5DAT|1|2|C|224
5DAT|1|2|A|225
5DAT|1|2|A|226
5DAT|1|2|U|227
5DAT|1|2|G|228
*
5DAT|1|2|C|237
5DAT|1|2|U|238
5DAT|1|2|C|239
5DAT|1|2|U|240
5DAT|1|2|U|241
5DAT|1|2|U|242
5DAT|1|2|G|243
*
5DAT|1|2|C|250
5DAT|1|2|A|251
5DAT|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A