J3_5DAT_072

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGGAG*CUAC*GGAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|U|1168
5DAT|1|2|G|1169
5DAT|1|2|G|1170
5DAT|1|2|A|1171
5DAT|1|2|G|1172
*
5DAT|1|2|C|1467
5DAT|1|2|U|1468
5DAT|1|2|A|1469
5DAT|1|2|C|1470
*
5DAT|1|2|G|1574
5DAT|1|2|G|1575
5DAT|1|2|A|1576
5DAT|1|2|A|1577

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A

Chain S5

40S ribosomal protein S5