J3_5DAT_075

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CACUG*CGUGCUGGGGAUA*UUCAACGAG

Length

27 nucleotides

Bulged bases

5DAT|1|2|U|1473, 5DAT|1|2|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|C|1470
5DAT|1|2|A|1471
5DAT|1|2|C|1472
5DAT|1|2|U|1473
5DAT|1|2|G|1474
*
5DAT|1|2|C|1533
5DAT|1|2|G|1534
5DAT|1|2|U|1535
5DAT|1|2|G|1536
5DAT|1|2|C|1537
5DAT|1|2|U|1538
5DAT|1|2|G|1539
5DAT|1|2|G|1540
5DAT|1|2|G|1541
5DAT|1|2|G|1542
5DAT|1|2|A|1543
5DAT|1|2|U|1544
5DAT|1|2|A|1545
*
5DAT|1|2|U|1566
5DAT|1|2|U|1567
5DAT|1|2|C|1568
5DAT|1|2|A|1569
5DAT|1|2|A|1570
5DAT|1|2|C|1571
5DAT|1|2|G|1572
5DAT|1|2|A|1573
5DAT|1|2|G|1574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A

Chain D5

40S ribosomal protein S25-A

Chain S5

40S ribosomal protein S5