3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
AC*GAUACGU*AAUCU
Length
14 nucleotides
Bulged bases
5DAT|1|8|U|60, 5DAT|1|8|C|62
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5DAT_090 not in the Motif Atlas
Homologous match to J3_8P9A_067
Geometric discrepancy: 0.0524
The information below is about J3_8P9A_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

5DAT|1|8|A|44
5DAT|1|8|C|45
*
5DAT|1|8|G|58
5DAT|1|8|A|59
5DAT|1|8|U|60
5DAT|1|8|A|61
5DAT|1|8|C|62
5DAT|1|8|G|63
5DAT|1|8|U|64
*
5DAT|1|8|A|96
5DAT|1|8|A|97
5DAT|1|8|U|98
5DAT|1|8|C|99
5DAT|1|8|U|100

Current chains

Chain 8
5.8S ribosomal RNA

Nearby chains

Chain n5
60S ribosomal protein L25
Chain o5
60S ribosomal protein L35-A
Chain o7
60S ribosomal protein L37-A
Chain o9
60S ribosomal protein L39

Coloring options:


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