J3_5DAT_090
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 5DAT|1|8|U|60, 5DAT|1|8|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DAT_090 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0524
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5DAT|1|8|A|44
5DAT|1|8|C|45
*
5DAT|1|8|G|58
5DAT|1|8|A|59
5DAT|1|8|U|60
5DAT|1|8|A|61
5DAT|1|8|C|62
5DAT|1|8|G|63
5DAT|1|8|U|64
*
5DAT|1|8|A|96
5DAT|1|8|A|97
5DAT|1|8|U|98
5DAT|1|8|C|99
5DAT|1|8|U|100
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain n5
- 60S ribosomal protein L25
- Chain o5
- 60S ribosomal protein L35-A
- Chain o7
- 60S ribosomal protein L37-A
- Chain o9
- 60S ribosomal protein L39
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