J3_5DC3_070

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5DC3|1|2|A|217, 5DC3|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|2|A|213
5DC3|1|2|G|214
5DC3|1|2|A|215
5DC3|1|2|U|216
5DC3|1|2|A|217
5DC3|1|2|A|218
5DC3|1|2|A|219
5DC3|1|2|A|220
5DC3|1|2|A|221
5DC3|1|2|A|222
5DC3|1|2|U|223
5DC3|1|2|C|224
5DC3|1|2|A|225
5DC3|1|2|A|226
5DC3|1|2|U|227
5DC3|1|2|G|228
*
5DC3|1|2|C|237
5DC3|1|2|U|238
5DC3|1|2|C|239
5DC3|1|2|U|240
5DC3|1|2|U|241
5DC3|1|2|U|242
5DC3|1|2|G|243
*
5DC3|1|2|C|250
5DC3|1|2|A|251
5DC3|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A