J3_5DC3_079
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 5DC3|1|5|C|2760, 5DC3|1|5|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DC3_079 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.0471
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DC3|1|5|G|2651
5DC3|1|5|U|2652
5DC3|1|5|C|2653
*
5DC3|1|5|G|2754
5DC3|1|5|C|2755
5DC3|1|5|C|2756
5DC3|1|5|U|2757
5DC3|1|5|A|2758
5DC3|1|5|U|2759
5DC3|1|5|C|2760
5DC3|1|5|G|2761
5DC3|1|5|A|2762
5DC3|1|5|U|2763
5DC3|1|5|C|2764
5DC3|1|5|C|2765
*
5DC3|1|5|G|2793
5DC3|1|5|G|2794
5DC3|1|5|U|2795
5DC3|1|5|G|2796
5DC3|1|5|C|2797
5DC3|1|5|C|2798
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain f
- Eukaryotic translation initiation factor 5A-1
- Chain m8
- 60S ribosomal protein L18-A
- Chain n1
- 60S ribosomal protein L21-A
- Chain n8
- 60S ribosomal protein L28
- Chain q2
- 60S ribosomal protein L42-A
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