J3_5DFE_029

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DFE_029 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1017

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5DFE|1|XA|G|46
5DFE|1|XA|C|47
*
5DFE|1|XA|G|361
5DFE|1|XA|G|362
5DFE|1|XA|A|363
5DFE|1|XA|A|364
5DFE|1|XA|U|365
5DFE|1|XA|C|366
5DFE|1|XA|U|367
*
5DFE|1|XA|A|393
5DFE|1|XA|G|394
5DFE|1|XA|C|395

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16