J3_5DGE_023

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

5DGE|1|2|G|1199, 5DGE|1|2|G|1201, 5DGE|1|2|A|1203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DGE_023 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.0888

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5DGE|1|2|C|1180
5DGE|1|2|U|1181
5DGE|1|2|U|1182
5DGE|1|2|A|1183
5DGE|1|2|A|1184
5DGE|1|2|U|1185
5DGE|1|2|U|1186
5DGE|1|2|U|1187
*
5DGE|1|2|G|1198
5DGE|1|2|G|1199
5DGE|1|2|G|1200
5DGE|1|2|G|1201
5DGE|1|2|A|1202
5DGE|1|2|A|1203
5DGE|1|2|A|1204
5DGE|1|2|C|1205
5DGE|1|2|U|1206
5DGE|1|2|C|1207
5DGE|1|2|A|1208
5DGE|1|2|C|1209
*
5DGE|1|2|G|1454
5DGE|1|2|G|1455
5DGE|1|2|C|1456
5DGE|1|2|C|1457
5DGE|1|2|G|1458

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C5

40S ribosomal protein S15

Chain C8

40S ribosomal protein S18-A

Chain D0

40S ribosomal protein S20

Chain D9

40S ribosomal protein S29-A

Chain E1

Ubiquitin-40S ribosomal protein S31

Chain SM

Suppressor protein STM1