J3_5DGE_068

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UAUC*GUUG*CACUAAUA

Length

16 nucleotides

Bulged bases

5DGE|1|1|A|2887, 5DGE|1|1|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|1|U|2886
5DGE|1|1|A|2887
5DGE|1|1|U|2888
5DGE|1|1|C|2889
*
5DGE|1|1|G|2914
5DGE|1|1|U|2915
5DGE|1|1|U|2916
5DGE|1|1|G|2917
*
5DGE|1|1|C|2929
5DGE|1|1|A|2930
5DGE|1|1|C|2931
5DGE|1|1|U|2932
5DGE|1|1|A|2933
5DGE|1|1|A|2934
5DGE|1|1|U|2935
5DGE|1|1|A|2936

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain M6

60S ribosomal protein L16-A

Chain N3

60S ribosomal protein L23-A