J3_5DGE_072

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5DGE|1|2|A|217, 5DGE|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|2|A|213
5DGE|1|2|G|214
5DGE|1|2|A|215
5DGE|1|2|U|216
5DGE|1|2|A|217
5DGE|1|2|A|218
5DGE|1|2|A|219
5DGE|1|2|A|220
5DGE|1|2|A|221
5DGE|1|2|A|222
5DGE|1|2|U|223
5DGE|1|2|C|224
5DGE|1|2|A|225
5DGE|1|2|A|226
5DGE|1|2|U|227
5DGE|1|2|G|228
*
5DGE|1|2|C|237
5DGE|1|2|U|238
5DGE|1|2|C|239
5DGE|1|2|U|240
5DGE|1|2|U|241
5DGE|1|2|U|242
5DGE|1|2|G|243
*
5DGE|1|2|C|250
5DGE|1|2|A|251
5DGE|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A