J3_5DGF_070

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5DGF|1|2|A|217, 5DGF|1|2|U|238, 5DGF|1|2|C|239, 5DGF|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGF|1|2|A|213
5DGF|1|2|G|214
5DGF|1|2|A|215
5DGF|1|2|U|216
5DGF|1|2|A|217
5DGF|1|2|A|218
5DGF|1|2|A|219
5DGF|1|2|A|220
5DGF|1|2|A|221
5DGF|1|2|A|222
5DGF|1|2|U|223
5DGF|1|2|C|224
5DGF|1|2|A|225
5DGF|1|2|A|226
5DGF|1|2|U|227
5DGF|1|2|G|228
*
5DGF|1|2|C|237
5DGF|1|2|U|238
5DGF|1|2|C|239
5DGF|1|2|U|240
5DGF|1|2|U|241
5DGF|1|2|U|242
5DGF|1|2|G|243
*
5DGF|1|2|C|250
5DGF|1|2|A|251
5DGF|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A