J3_5DGF_080

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU

Length

36 nucleotides

Bulged bases

5DGF|1|5|A|3172, 5DGF|1|5|G|3173, 5DGF|1|5|A|3215, 5DGF|1|5|G|3216, 5DGF|1|5|G|3219, 5DGF|1|5|A|3268, 5DGF|1|5|U|3270, 5DGF|1|5|C|3272, 5DGF|1|5|G|3276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGF|1|5|A|3168
5DGF|1|5|U|3169
5DGF|1|5|A|3170
5DGF|1|5|U|3171
5DGF|1|5|A|3172
5DGF|1|5|G|3173
5DGF|1|5|A|3174
5DGF|1|5|U|3175
5DGF|1|5|G|3176
*
5DGF|1|5|C|3212
5DGF|1|5|A|3213
5DGF|1|5|U|3214
5DGF|1|5|A|3215
5DGF|1|5|G|3216
5DGF|1|5|C|3217
5DGF|1|5|A|3218
5DGF|1|5|G|3219
5DGF|1|5|G|3220
*
5DGF|1|5|C|3265
5DGF|1|5|G|3266
5DGF|1|5|A|3267
5DGF|1|5|A|3268
5DGF|1|5|U|3269
5DGF|1|5|U|3270
5DGF|1|5|G|3271
5DGF|1|5|C|3272
5DGF|1|5|A|3273
5DGF|1|5|A|3274
5DGF|1|5|U|3275
5DGF|1|5|G|3276
5DGF|1|5|U|3277
5DGF|1|5|C|3278
5DGF|1|5|A|3279
5DGF|1|5|U|3280
5DGF|1|5|U|3281
5DGF|1|5|U|3282

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l6

60S ribosomal protein L6-A

Chain m4

60S ribosomal protein L14-A

Chain m6

60S ribosomal protein L16-A

Chain o3

60S ribosomal protein L33-A