J3_5DGV_006
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 5DGV|1|1|A|1065, 5DGV|1|1|U|1094, 5DGV|1|1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGV_006 not in the Motif Atlas
- Homologous match to J3_5TBW_006
- Geometric discrepancy: 0.1161
- The information below is about J3_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DGV|1|1|U|986
5DGV|1|1|U|987
*
5DGV|1|1|A|1062
5DGV|1|1|G|1063
5DGV|1|1|A|1064
5DGV|1|1|A|1065
5DGV|1|1|G|1066
*
5DGV|1|1|C|1092
5DGV|1|1|A|1093
5DGV|1|1|U|1094
5DGV|1|1|U|1095
5DGV|1|1|U|1096
5DGV|1|1|G|1097
5DGV|1|1|A|1098
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L7
- 60S ribosomal protein L7-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain N9
- 60S ribosomal protein L29
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