J3_5DGV_036
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GACG*CGCUAAGG*CAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGV|1|5|G|1230
5DGV|1|5|A|1231
5DGV|1|5|C|1232
5DGV|1|5|G|1233
*
5DGV|1|5|C|1255
5DGV|1|5|G|1256
5DGV|1|5|C|1257
5DGV|1|5|U|1258
5DGV|1|5|A|1259
5DGV|1|5|A|1260
5DGV|1|5|G|1261
5DGV|1|5|G|1262
*
5DGV|1|5|C|1277
5DGV|1|5|A|1278
5DGV|1|5|C|1279
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m2
- 60S ribosomal protein L12-A (uL11)
- Chain p0
- 60S acidic ribosomal protein P0
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