J3_5DGV_070

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5DGV|1|2|A|217, 5DGV|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|2|A|213
5DGV|1|2|G|214
5DGV|1|2|A|215
5DGV|1|2|U|216
5DGV|1|2|A|217
5DGV|1|2|A|218
5DGV|1|2|A|219
5DGV|1|2|A|220
5DGV|1|2|A|221
5DGV|1|2|A|222
5DGV|1|2|U|223
5DGV|1|2|C|224
5DGV|1|2|A|225
5DGV|1|2|A|226
5DGV|1|2|U|227
5DGV|1|2|G|228
*
5DGV|1|2|C|237
5DGV|1|2|U|238
5DGV|1|2|C|239
5DGV|1|2|U|240
5DGV|1|2|U|241
5DGV|1|2|U|242
5DGV|1|2|G|243
*
5DGV|1|2|C|250
5DGV|1|2|A|251
5DGV|1|2|U|252

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A