J3_5DGV_071
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 5DGV|1|2|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGV_071 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.0959
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5DGV|1|2|U|633
5DGV|1|2|G|634
5DGV|1|2|A|635
*
5DGV|1|2|U|861
5DGV|1|2|A|862
5DGV|1|2|A|863
5DGV|1|2|U|864
5DGV|1|2|A|865
5DGV|1|2|G|866
*
5DGV|1|2|C|962
5DGV|1|2|A|963
5DGV|1|2|U|964
5DGV|1|2|U|965
5DGV|1|2|A|966
Current chains
- Chain 2
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A
- Chain C3
- 40S ribosomal protein S13
- Chain D2
- 40S ribosomal protein S22-A
- Chain D3
- 40S ribosomal protein S23-A
- Chain D7
- 40S ribosomal protein S27-A
- Chain S7
- 40S ribosomal protein S7-A
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