J3_5DGV_074
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 5DGV|1|5|U|117, 5DGV|1|5|G|120, 5DGV|1|5|A|121, 5DGV|1|5|U|147, 5DGV|1|5|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGV|1|5|C|113
5DGV|1|5|A|114
5DGV|1|5|A|115
5DGV|1|5|A|116
5DGV|1|5|U|117
5DGV|1|5|U|118
5DGV|1|5|U|119
5DGV|1|5|G|120
5DGV|1|5|A|121
5DGV|1|5|A|122
5DGV|1|5|A|123
5DGV|1|5|U|124
*
5DGV|1|5|A|144
5DGV|1|5|G|145
5DGV|1|5|U|146
5DGV|1|5|U|147
5DGV|1|5|G|148
5DGV|1|5|U|149
5DGV|1|5|A|150
5DGV|1|5|A|151
5DGV|1|5|U|152
5DGV|1|5|U|153
5DGV|1|5|U|154
5DGV|1|5|G|155
5DGV|1|5|G|156
5DGV|1|5|A|157
5DGV|1|5|G|158
*
5DGV|1|5|C|263
5DGV|1|5|G|264
5DGV|1|5|A|265
5DGV|1|5|A|266
5DGV|1|5|G|267
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l8
- 60S ribosomal protein L8-A (eL8)
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o6
- 60S ribosomal protein L36-A
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