J3_5DM8_005

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAG*CUUCAAAG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM8|1|X|G|1055
5DM8|1|X|G|1056
5DM8|1|X|A|1057
5DM8|1|X|G|1058
*
5DM8|1|X|C|1080
5DM8|1|X|U|1081
5DM8|1|X|U|1082
5DM8|1|X|C|1083
5DM8|1|X|A|1084
5DM8|1|X|A|1085
5DM8|1|X|A|1086
5DM8|1|X|G|1087
*
5DM8|1|X|C|1102
5DM8|1|X|A|1103
5DM8|1|X|C|1104

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain F

50S ribosomal protein L11