J3_5DM8_010

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAUC*GUU*AUUAAAGC

Length

16 nucleotides

Bulged bases

5DM8|1|X|A|2518, 5DM8|1|X|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM8|1|X|G|2516
5DM8|1|X|C|2517
5DM8|1|X|A|2518
5DM8|1|X|U|2519
5DM8|1|X|C|2520
*
5DM8|1|X|G|2545
5DM8|1|X|U|2546
5DM8|1|X|U|2547
*
5DM8|1|X|A|2561
5DM8|1|X|U|2562
5DM8|1|X|U|2563
5DM8|1|X|A|2564
5DM8|1|X|A|2565
5DM8|1|X|A|2566
5DM8|1|X|G|2567
5DM8|1|X|C|2568

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14