J3_5DOX_003

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DOX_003 not in the Motif Atlas

Homologous match to J3_7RQB_006

Geometric discrepancy: 0.188

The information below is about J3_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOX|1|1A|G|1055
5DOX|1|1A|G|1056
5DOX|1|1A|A|1057
*
5DOX|1|1A|U|1081
5DOX|1|1A|U|1082
5DOX|1|1A|U|1083
5DOX|1|1A|A|1084
5DOX|1|1A|A|1085
5DOX|1|1A|A|1086
5DOX|1|1A|G|1087
*
5DOX|1|1A|C|1102
5DOX|1|1A|A|1103
5DOX|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36