J3_5DOX_040
3D structure
- PDB id
- 5DOX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGA*UUUAAAG*CACU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DOX_040 not in the Motif Atlas
- Geometric match to J3_8VTW_042
- Geometric discrepancy: 0.2356
- The information below is about J3_8VTW_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46457.1
- Basepair signature
- cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5DOX|1|1A|A|1054
5DOX|1|1A|G|1055
5DOX|1|1A|G|1056
5DOX|1|1A|A|1057
*
5DOX|1|1A|U|1081
5DOX|1|1A|U|1082
5DOX|1|1A|U|1083
5DOX|1|1A|A|1084
5DOX|1|1A|A|1085
5DOX|1|1A|A|1086
5DOX|1|1A|G|1087
*
5DOX|1|1A|C|1102
5DOX|1|1A|A|1103
5DOX|1|1A|C|1104
5DOX|1|1A|U|1105
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
Coloring options: