J3_5DOY_011
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DOY_011 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0728
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
5DOY|1|1a|C|936
5DOY|1|1a|A|937
5DOY|1|1a|A|938
5DOY|1|1a|G|939
*
5DOY|1|1a|C|1344
5DOY|1|1a|U|1345
5DOY|1|1a|A|1346
5DOY|1|1a|G|1347
5DOY|1|1a|U|1348
5DOY|1|1a|A|1349
5DOY|1|1a|A|1350
*
5DOY|1|1a|U|1372
5DOY|1|1a|G|1373
5DOY|1|1a|A|1374
5DOY|1|1a|A|1375
5DOY|1|1a|U|1376
5DOY|1|1a|A|1377
5DOY|1|1a|C|1378
5DOY|1|1a|G|1379
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S Ribosomal Protein S7
- Chain 1i
- 30S Ribosomal Protein S9
- Chain 1y
- Transfer RNA; tRNA
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