J3_5DOY_068
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 5DOY|1|2a|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DOY_068 not in the Motif Atlas
- Geometric match to J3_1KUQ_001
- Geometric discrepancy: 0.1238
- The information below is about J3_1KUQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5DOY|1|2a|C|586
5DOY|1|2a|G|587
5DOY|1|2a|G|588
*
5DOY|1|2a|C|651
5DOY|1|2a|U|652
5DOY|1|2a|A|653
5DOY|1|2a|G|654
*
5DOY|1|2a|C|754
5DOY|1|2a|G|755
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2h
- 30S Ribosomal Protein S8
- Chain 2l
- 30S Ribosomal Protein S12
- Chain 2o
- 30S Ribosomal Protein S15
- Chain 2q
- 30S Ribosomal Protein S17
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