J3_5DOY_070

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGGAAU*GGAACGCCGAUGG*CAG

Length

22 nucleotides

Bulged bases

5DOY|1|2a|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOY|1|2a|U|672
5DOY|1|2a|G|673
5DOY|1|2a|G|674
5DOY|1|2a|A|675
5DOY|1|2a|A|676
5DOY|1|2a|U|677
*
5DOY|1|2a|G|713
5DOY|1|2a|G|714
5DOY|1|2a|A|715
5DOY|1|2a|A|716
5DOY|1|2a|C|717
5DOY|1|2a|G|718
5DOY|1|2a|C|719
5DOY|1|2a|C|720
5DOY|1|2a|G|721
5DOY|1|2a|A|722
5DOY|1|2a|U|723
5DOY|1|2a|G|724
5DOY|1|2a|G|725
*
5DOY|1|2a|C|732
5DOY|1|2a|A|733
5DOY|1|2a|G|734

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2D

50S Ribosomal Protein L2

Chain 2f

30S Ribosomal Protein S6

Chain 2k

30S Ribosomal Protein S11

Chain 2o

30S Ribosomal Protein S15

Chain 2r

30S Ribosomal Protein S18