3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAAG*CGCAAAC*GUG
Length
14 nucleotides
Bulged bases
5E7K|1|1H|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5E7K_027 not in the Motif Atlas
Homologous match to J3_7RQB_008
Geometric discrepancy: 0.0524
The information below is about J3_7RQB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16623.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

5E7K|1|1H|C|1306
5E7K|1|1H|A|1307
5E7K|1|1H|A|1308
5E7K|1|1H|G|1309
*
5E7K|1|1H|C|1605
5E7K|1|1H|G|1606
5E7K|1|1H|C|1607
5E7K|1|1H|A|1608
5E7K|1|1H|A|1609
5E7K|1|1H|A|1610
5E7K|1|1H|C|1611
*
5E7K|1|1H|G|1620
5E7K|1|1H|U|1621
5E7K|1|1H|G|1622

Current chains

Chain 1H
23S rRNA

Nearby chains

Chain P8
50S ribosomal protein L34

Coloring options:


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