3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
5E7K|1|1H|A|2388, 5E7K|1|1H|U|2390, 5E7K|1|1H|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5E7K_069 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.1141
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

5E7K|1|1H|G|2282
5E7K|1|1H|C|2283
5E7K|1|1H|C|2284
*
5E7K|1|1H|G|2384
5E7K|1|1H|C|2385
5E7K|1|1H|C|2386
5E7K|1|1H|U|2387
5E7K|1|1H|A|2388
5E7K|1|1H|G|2389
5E7K|1|1H|U|2390
5E7K|1|1H|G|2391
5E7K|1|1H|A|2392
5E7K|1|1H|A|2393
5E7K|1|1H|C|2394
5E7K|1|1H|C|2395
*
5E7K|1|1H|G|2421
5E7K|1|1H|A|2422
5E7K|1|1H|U|2423
5E7K|1|1H|C|2424
5E7K|1|1H|A|2425
5E7K|1|1H|A|2426
5E7K|1|1H|C|2427

Current chains

Chain 1H
23S rRNA

Nearby chains

Chain 3K
Transfer RNA; tRNA
Chain 78
50S ribosomal protein L15
Chain I8
50S ribosomal protein L27
Chain J8
50S ribosomal protein L28
Chain Q8
50S ribosomal protein L35

Coloring options:


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