J3_5E81_014

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

5E81|1|14|G|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5E81_014 not in the Motif Atlas

Homologous match to J3_9DFE_016

Geometric discrepancy: 0.1622

The information below is about J3_9DFE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5E81|1|14|C|2295
5E81|1|14|U|2296
5E81|1|14|C|2297
*
5E81|1|14|G|2321
5E81|1|14|A|2322
5E81|1|14|G|2323
*
5E81|1|14|U|2332
5E81|1|14|A|2333
5E81|1|14|G|2334
5E81|1|14|A|2335
5E81|1|14|A|2336
5E81|1|14|G|2337

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 2L

Transfer RNA; tRNA

Chain 49

50S ribosomal protein L5

Chain 65

50S ribosomal protein L18

Chain E5

50S ribosomal protein L27