J3_5E81_025

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5E81|1|1H|G|686, 5E81|1|1H|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5E81_025 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0885

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5E81|1|1H|C|683
5E81|1|1H|G|684
5E81|1|1H|A|685
5E81|1|1H|G|686
5E81|1|1H|C|687
5E81|1|1H|U|688
5E81|1|1H|A|689
*
5E81|1|1H|U|773
5E81|1|1H|A|774
5E81|1|1H|G|775
*
5E81|1|1H|C|791
5E81|1|1H|G|792
5E81|1|1H|A|793
5E81|1|1H|G|794

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain P8

50S ribosomal protein L34