J3_5E81_043

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

5E81|1|14|U|72, 5E81|1|14|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5E81_043 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.1205

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5E81|1|14|A|56
5E81|1|14|C|57
*
5E81|1|14|G|70
5E81|1|14|A|71
5E81|1|14|U|72
5E81|1|14|A|73
5E81|1|14|A|74
5E81|1|14|G|75
5E81|1|14|C|76
*
5E81|1|14|G|110
5E81|1|14|A|111
5E81|1|14|U|112
5E81|1|14|G|113
5E81|1|14|U|114

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain G5

50S ribosomal protein L29

Chain L5

50S ribosomal protein L34