J3_5EL4_027

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL4_027 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0596

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5EL4|1|1H|C|698
5EL4|1|1H|A|699
5EL4|1|1H|G|700
*
5EL4|1|1H|C|732
5EL4|1|1H|G|733
5EL4|1|1H|A|734
5EL4|1|1H|A|735
5EL4|1|1H|C|736
*
5EL4|1|1H|G|760
5EL4|1|1H|A|761
5EL4|1|1H|U|762
5EL4|1|1H|G|763

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2