J3_5EL5_004
3D structure
- PDB id
- 5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 5EL5|1|13|A|975, 5EL5|1|13|G|976, 5EL5|1|13|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5EL5_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0898
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5EL5|1|13|U|955
5EL5|1|13|U|956
5EL5|1|13|U|957
5EL5|1|13|A|958
5EL5|1|13|A|959
5EL5|1|13|U|960
5EL5|1|13|U|961
5EL5|1|13|C|962
*
5EL5|1|13|G|973
5EL5|1|13|A|974
5EL5|1|13|A|975
5EL5|1|13|G|976
5EL5|1|13|A|977
5EL5|1|13|A|978
5EL5|1|13|C|979
5EL5|1|13|C|980
5EL5|1|13|U|981
5EL5|1|13|U|982
5EL5|1|13|A|983
5EL5|1|13|C|984
*
5EL5|1|13|G|1221
5EL5|1|13|G|1222
5EL5|1|13|C|1223
5EL5|1|13|G|1224
5EL5|1|13|A|1225
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1I
- 30S ribosomal protein S10
- Chain 1K
- Transfer RNA; tRNA
- Chain 4I
- 30S ribosomal protein S13
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain AI
- 30S ribosomal protein S19
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