J3_5EL5_010

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5EL5|1|14|G|686, 5EL5|1|14|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL5_010 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.101

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5EL5|1|14|C|683
5EL5|1|14|G|684
5EL5|1|14|A|685
5EL5|1|14|G|686
5EL5|1|14|C|687
5EL5|1|14|U|688
5EL5|1|14|A|689
*
5EL5|1|14|U|773
5EL5|1|14|A|774
5EL5|1|14|G|775
*
5EL5|1|14|C|791
5EL5|1|14|G|792
5EL5|1|14|A|793
5EL5|1|14|G|794

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34