J3_5EL6_018

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL6_018 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1181

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5EL6|1|1G|C|936
5EL6|1|1G|A|937
5EL6|1|1G|A|938
5EL6|1|1G|G|939
*
5EL6|1|1G|C|1344
5EL6|1|1G|U|1345
5EL6|1|1G|A|1346
5EL6|1|1G|G|1347
5EL6|1|1G|U|1348
5EL6|1|1G|A|1349
5EL6|1|1G|A|1350
*
5EL6|1|1G|U|1372
5EL6|1|1G|G|1373
5EL6|1|1G|A|1374
5EL6|1|1G|A|1375
5EL6|1|1G|U|1376
5EL6|1|1G|A|1377
5EL6|1|1G|C|1378
5EL6|1|1G|G|1379

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain 62

30S ribosomal protein S7

Chain 82

30S ribosomal protein S9