J3_5EL6_020
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUAC*GGCGAC
- Length
- 27 nucleotides
- Bulged bases
- 5EL6|1|1G|A|975, 5EL6|1|1G|G|976, 5EL6|1|1G|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5EL6|1|1G|G|954
5EL6|1|1G|U|955
5EL6|1|1G|U|956
5EL6|1|1G|U|957
5EL6|1|1G|A|958
5EL6|1|1G|A|959
5EL6|1|1G|U|960
5EL6|1|1G|U|961
5EL6|1|1G|C|962
*
5EL6|1|1G|G|973
5EL6|1|1G|A|974
5EL6|1|1G|A|975
5EL6|1|1G|G|976
5EL6|1|1G|A|977
5EL6|1|1G|A|978
5EL6|1|1G|C|979
5EL6|1|1G|C|980
5EL6|1|1G|U|981
5EL6|1|1G|U|982
5EL6|1|1G|A|983
5EL6|1|1G|C|984
*
5EL6|1|1G|G|1221
5EL6|1|1G|G|1222
5EL6|1|1G|C|1223
5EL6|1|1G|G|1224
5EL6|1|1G|A|1225
5EL6|1|1G|C|1226
Current chains
- Chain 1G
- 16S rRNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain AA
- 30S ribosomal protein S19
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