J3_5EL6_057

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUG*CAG*CUUACGG

Length

15 nucleotides

Bulged bases

5EL6|1|1G|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL6|1|1G|C|989
5EL6|1|1G|C|990
5EL6|1|1G|U|991
5EL6|1|1G|U|992
5EL6|1|1G|G|993
*
5EL6|1|1G|C|1045
5EL6|1|1G|A|1046
5EL6|1|1G|G|1047
*
5EL6|1|1G|C|1210
5EL6|1|1G|U|1211
5EL6|1|1G|U|1212
5EL6|1|1G|A|1213
5EL6|1|1G|C|1214
5EL6|1|1G|G|1215
5EL6|1|1G|G|1216

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 5A

30S ribosomal protein S14 type Z