J3_5EL7_004

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL7_004 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1645

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5EL7|1|13|C|990
5EL7|1|13|U|991
5EL7|1|13|U|992
5EL7|1|13|G|993
*
5EL7|1|13|C|1045
5EL7|1|13|A|1046
5EL7|1|13|G|1047
*
5EL7|1|13|C|1210
5EL7|1|13|U|1211
5EL7|1|13|U|1212
5EL7|1|13|A|1213
5EL7|1|13|C|1214
5EL7|1|13|G|1215

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 5I

30S ribosomal protein S14 type Z