J3_5EL7_028

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

5EL7|1|1H|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL7_028 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0651

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5EL7|1|1H|C|1306
5EL7|1|1H|A|1307
5EL7|1|1H|A|1308
5EL7|1|1H|G|1309
*
5EL7|1|1H|C|1605
5EL7|1|1H|G|1606
5EL7|1|1H|C|1607
5EL7|1|1H|A|1608
5EL7|1|1H|A|1609
5EL7|1|1H|A|1610
5EL7|1|1H|C|1611
*
5EL7|1|1H|G|1620
5EL7|1|1H|U|1621
5EL7|1|1H|G|1622

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain P8

50S ribosomal protein L34