J3_5EL7_044
3D structure
- PDB id
- 5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 5EL7|1|14|U|72, 5EL7|1|14|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5EL7_044 not in the Motif Atlas
- Homologous match to J3_9DFE_004
- Geometric discrepancy: 0.139
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5EL7|1|14|A|56
5EL7|1|14|C|57
*
5EL7|1|14|G|70
5EL7|1|14|A|71
5EL7|1|14|U|72
5EL7|1|14|A|73
5EL7|1|14|A|74
5EL7|1|14|G|75
5EL7|1|14|C|76
*
5EL7|1|14|G|110
5EL7|1|14|A|111
5EL7|1|14|U|112
5EL7|1|14|G|113
5EL7|1|14|U|114
Current chains
- Chain 14
- 23S rRNA
Nearby chains
- Chain B5
- 50S ribosomal protein L23
- Chain G5
- 50S ribosomal protein L29
- Chain L5
- 50S ribosomal protein L34
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