J3_5F8K_016

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5F8K_016 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.2133

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|1a|G|1002
5F8K|1|1a|G|1003
5F8K|1|1a|A|1004
5F8K|1|1a|A|1005
5F8K|1|1a|C|1006
*
5F8K|1|1a|G|1023
5F8K|1|1a|G|1024
5F8K|1|1a|U|1025
5F8K|1|1a|G|1026
5F8K|1|1a|C|1027
5F8K|1|1a|C|1028
*
5F8K|1|1a|G|1033
5F8K|1|1a|G|1034
5F8K|1|1a|A|1035
5F8K|1|1a|G|1036
5F8K|1|1a|C|1037
5F8K|1|1a|C|1038

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains