J3_5F8K_062
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5F8K|1|2A|A|2388, 5F8K|1|2A|U|2390, 5F8K|1|2A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5F8K_062 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0656
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5F8K|1|2A|G|2282
5F8K|1|2A|C|2283
5F8K|1|2A|C|2284
*
5F8K|1|2A|G|2384
5F8K|1|2A|C|2385
5F8K|1|2A|C|2386
5F8K|1|2A|U|2387
5F8K|1|2A|A|2388
5F8K|1|2A|G|2389
5F8K|1|2A|U|2390
5F8K|1|2A|G|2391
5F8K|1|2A|A|2392
5F8K|1|2A|A|2393
5F8K|1|2A|C|2394
5F8K|1|2A|C|2395
*
5F8K|1|2A|G|2421
5F8K|1|2A|A|2422
5F8K|1|2A|U|2423
5F8K|1|2A|C|2424
5F8K|1|2A|A|2425
5F8K|1|2A|A|2426
5F8K|1|2A|C|2427
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2P
- 50S ribosomal protein L15
- Chain 2Z
- 50S ribosomal protein L25
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