3D structure

PDB id
5FCI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
Length
28 nucleotides
Bulged bases
5FCI|1|5|A|398, 5FCI|1|5|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5FCI_073 not in the Motif Atlas
Homologous match to J3_8P9A_047
Geometric discrepancy: 0.0468
The information below is about J3_8P9A_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5FCI|1|5|A|369
5FCI|1|5|U|370
5FCI|1|5|G|371
5FCI|1|5|A|372
5FCI|1|5|A|373
5FCI|1|5|A|374
5FCI|1|5|A|375
5FCI|1|5|G|376
5FCI|1|5|A|377
5FCI|1|5|A|378
5FCI|1|5|C|379
*
5FCI|1|5|G|390
5FCI|1|5|A|391
5FCI|1|5|G|392
5FCI|1|5|U|393
5FCI|1|5|G|394
5FCI|1|5|A|395
5FCI|1|5|A|396
5FCI|1|5|A|397
5FCI|1|5|A|398
5FCI|1|5|A|399
5FCI|1|5|G|400
5FCI|1|5|U|401
5FCI|1|5|A|402
5FCI|1|5|C|403
5FCI|1|5|G|404
*
5FCI|1|8|C|19
5FCI|1|8|U|20

Current chains

Chain 5
25S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain m7
60S ribosomal protein L17-A
Chain n6
60S ribosomal protein L26-A
Chain o9
60S ribosomal protein L39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.1387 s