J3_5FCJ_057

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5FCJ|1|2|A|217, 5FCJ|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCJ|1|2|A|213
5FCJ|1|2|G|214
5FCJ|1|2|A|215
5FCJ|1|2|U|216
5FCJ|1|2|A|217
5FCJ|1|2|A|218
5FCJ|1|2|A|219
5FCJ|1|2|A|220
5FCJ|1|2|A|221
5FCJ|1|2|A|222
5FCJ|1|2|U|223
5FCJ|1|2|C|224
5FCJ|1|2|A|225
5FCJ|1|2|A|226
5FCJ|1|2|U|227
5FCJ|1|2|G|228
*
5FCJ|1|2|C|237
5FCJ|1|2|U|238
5FCJ|1|2|C|239
5FCJ|1|2|U|240
5FCJ|1|2|U|241
5FCJ|1|2|U|242
5FCJ|1|2|G|243
*
5FCJ|1|2|C|250
5FCJ|1|2|A|251
5FCJ|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A