J3_5FDU_011
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FDU_011 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0596
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
5FDU|1|1a|C|936
5FDU|1|1a|A|937
5FDU|1|1a|A|938
5FDU|1|1a|G|939
*
5FDU|1|1a|C|1344
5FDU|1|1a|U|1345
5FDU|1|1a|A|1346
5FDU|1|1a|G|1347
5FDU|1|1a|U|1348
5FDU|1|1a|A|1349
5FDU|1|1a|A|1350
*
5FDU|1|1a|U|1372
5FDU|1|1a|G|1373
5FDU|1|1a|A|1374
5FDU|1|1a|A|1375
5FDU|1|1a|U|1376
5FDU|1|1a|A|1377
5FDU|1|1a|C|1378
5FDU|1|1a|G|1379
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
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