J3_5FDU_015

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAC*GGUGCCC*GGGAGCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|1a|G|1002
5FDU|1|1a|G|1003
5FDU|1|1a|A|1004
5FDU|1|1a|A|1005
5FDU|1|1a|C|1006
*
5FDU|1|1a|G|1023
5FDU|1|1a|G|1024
5FDU|1|1a|U|1025
5FDU|1|1a|G|1026
5FDU|1|1a|C|1027
5FDU|1|1a|C|1028
5FDU|1|1a|C|1029
*
5FDU|1|1a|G|1032
5FDU|1|1a|G|1033
5FDU|1|1a|G|1034
5FDU|1|1a|A|1035
5FDU|1|1a|G|1036
5FDU|1|1a|C|1037
5FDU|1|1a|C|1038

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains