3D structure

PDB id
5FDU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5FDU_020 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.0488
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

5FDU|1|2A|C|698
5FDU|1|2A|A|699
5FDU|1|2A|G|700
*
5FDU|1|2A|C|732
5FDU|1|2A|G|733
5FDU|1|2A|A|734
5FDU|1|2A|A|735
5FDU|1|2A|C|736
*
5FDU|1|2A|G|760
5FDU|1|2A|A|761
5FDU|1|2A|U|762
5FDU|1|2A|G|763

Current chains

Chain 2A
23S ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2

Coloring options:


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