J3_5FDU_038
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 5FDU|1|1A|U|71, 5FDU|1|1A|A|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FDU_038 not in the Motif Atlas
- Homologous match to J3_9DFE_004
- Geometric discrepancy: 0.041
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5FDU|1|1A|A|55
5FDU|1|1A|C|56
*
5FDU|1|1A|G|69
5FDU|1|1A|A|70
5FDU|1|1A|U|71
5FDU|1|1A|A|72
5FDU|1|1A|A|73
5FDU|1|1A|G|74
5FDU|1|1A|C|75
*
5FDU|1|1A|G|108
5FDU|1|1A|A|109
5FDU|1|1A|U|110
5FDU|1|1A|G|111
5FDU|1|1A|U|112
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 12
- 50S ribosomal protein L29
- Chain 17
- 50S ribosomal protein L34
- Chain 1X
- 50S ribosomal protein L23
Coloring options: