J3_5FDU_051

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGAG*CUAC*GGAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|1a|U|943
5FDU|1|1a|G|944
5FDU|1|1a|G|945
5FDU|1|1a|A|946
5FDU|1|1a|G|947
*
5FDU|1|1a|C|1234
5FDU|1|1a|U|1235
5FDU|1|1a|A|1236
5FDU|1|1a|C|1237
*
5FDU|1|1a|G|1337
5FDU|1|1a|G|1338
5FDU|1|1a|A|1339
5FDU|1|1a|A|1340

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1i

30S ribosomal protein S9

Chain 1m

30S ribosomal protein S13

Chain 1u

30S ribosomal protein Thx

Chain 1x

Ribosome-associated inhibitor A