J3_5FDV_074

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|1a|G|1002
5FDV|1|1a|G|1003
5FDV|1|1a|A|1004
5FDV|1|1a|A|1005
5FDV|1|1a|C|1006
*
5FDV|1|1a|G|1023
5FDV|1|1a|G|1024
5FDV|1|1a|U|1025
5FDV|1|1a|G|1026
5FDV|1|1a|C|1027
5FDV|1|1a|C|1028
*
5FDV|1|1a|G|1033
5FDV|1|1a|G|1034
5FDV|1|1a|A|1035
5FDV|1|1a|G|1036
5FDV|1|1a|C|1037
5FDV|1|1a|C|1038

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains