J3_5FL8_003

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACUGAAGUGG*CCAAG*CUCUAGU

Length

22 nucleotides

Bulged bases

5FL8|1|x|A|1482, 5FL8|1|x|U|1484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FL8|1|x|A|1477
5FL8|1|x|C|1478
5FL8|1|x|U|1479
5FL8|1|x|G|1480
5FL8|1|x|A|1481
5FL8|1|x|A|1482
5FL8|1|x|G|1483
5FL8|1|x|U|1484
5FL8|1|x|G|1485
5FL8|1|x|G|1486
*
5FL8|1|x|C|1856
5FL8|1|x|C|1857
5FL8|1|x|A|1858
5FL8|1|x|A|1859
5FL8|1|x|G|1860
*
5FL8|1|x|C|1870
5FL8|1|x|U|1871
5FL8|1|x|C|1872
5FL8|1|x|U|1873
5FL8|1|x|A|1874
5FL8|1|x|G|1875
5FL8|1|x|U|1876

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain d

60S ribosomal protein L31-A

Chain g

60S ribosomal protein L34-A